- Center for Computing and IT (CC IT)
- Center for East Asia Cooperation Studies (CEACOS)
- Center for Environmental Health and Industrial
- Center for Global Civil Society Studies (Pacivis)
- Center for Research on
- Intergroup Relations and Conflict Resolution (CERIC)
- Center for Excellence Indigenous Biological Resources-Genome Studies (CoE IBR-GS)
- Center for Excellence Nano Science and Technology (CoE NST)
- Health Research Center for Crisis and Disaster (HRCCD)
- Institute of Human Virology and Cancer Biology (IHVCB).
- Research Group, Studies and Application of Basic Law Science
- Anthropology Laboratory
- Political Science Laboratory
- Center for Sociological Studies
- Institute of Demography
- Institute for Law and Society Studies
- Institute for Law and Technology Studies
- Institute for Fiscal Law Studies
- Institute for Civil Code Studies
- Institute for Islam and Islamic Law Studies
- Institute for Competition and Trade Policy Studies
- Institute for Capital Market and Financial Studies
- Institute for Law Institution Studies
- Institute for Sociology of Law and Constitution Studies
- Institute for Psychological Research (LPPsi)
- Institute for Measurement Instrument and Psychological Education Development (LPSP3)
- Institute for Indonesian Formal Law and Judicial System Studies
- Institute for International Law Studies
- Institute for Economy and Society Studies (LPEM)
- Institute for Applied Psychology (LPT)
- Institute for Law and Economic Studies
- Integrated Laboratory on Endocrinology Science
- Centre of Computer Science’s (PUSILKOM)
- Centre for Area and Urban Studies
- Centre for Health Administration and Policy Studies (CHAMPS)
- Centre for Anthropology Studies
- Centre for Australian Studies
- Centre for Disability Studies
- Centre for Health Economic and Policy Studies (PKEKK)
- Centre for European Studies
- Centre for Energy Studies
- Centre for International Relation Studies (CIRES)
- Center for Law and Good Governance Studies (CLGS)
- Centre for Administration Science Studies
- Centre for Social Welfare Science Studies
- Centre for Social Welfare Studies
- Centre for Criminology Studies
- Centre for Social and Political Development Studies
- Centre for Political Studies (Puskapol)
- Centre for Environmental Risk and Safety Studies
- Centre for Middle East and Islamic Studies
- Centre for American Area Studies
- Centre for Applied Geographics Research
- Centre for Family Welfare Research (PUSKA & IMPACT)
- Centre for Societal and Cultural Research (PPKB)
- Centre for Development Institution Research
- Centre for Science and Technology Research
- Centre for Human and Environmental Resources Research
- Centre for Epidemiology and Surveillance Research
- Centre for Marine Studies
- Centre for Japanese Studies
- Centre for Natural Product and Medicine Studies
- Centre of Communication Studies
- Research Centre for Materials Science
- SEAMEO- Tropmed RCCN